On Tue, Apr 3, 2012 at 1:57 AM, Xu, Jianpeng <jianpeng...@emory.edu> wrote: > Hi, > > I have installed our local galaxy. I have a question for Fastq Groomer: > > Is it an interior tool within Galaxy ? I mean you already incorporate it > into Galaxy? Or, you incorporate an external tool into Galaxy ? Do you know > some programs that can be used to do the quality score conversion ? > > Thanks a lot.
It is a Python script the Galaxy team wrote specifically for Galaxy, which uses the Galaxy FASTQ handling code. The source is here: https://bitbucket.org/galaxy/galaxy-central/src/default/tools/fastq/fastq_groomer.py https://bitbucket.org/galaxy/galaxy-central/src/default/tools/fastq/fastq_groomer.xml Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/