On Tue, Apr 3, 2012 at 1:57 AM, Xu, Jianpeng <jianpeng...@emory.edu> wrote:
> Hi,
> I have installed our local galaxy. I have a question for Fastq Groomer:
> Is it an interior tool within Galaxy ? I mean you already incorporate it
> into Galaxy?  Or, you incorporate an external tool into Galaxy ? Do you know
> some programs that can be used to do the quality score conversion ?
> Thanks a lot.

It is a Python script the Galaxy team wrote specifically for Galaxy,
which uses the Galaxy FASTQ handling code. The source is here:


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