I recently ran into a problem where the tool-dependency env.sh file was
not getting sourced for a particular tool. I realized that the problem
was in how the tool 'requirement' tag was specified.
The requirement tag was specified as in the Tool Config Syntax
However, it appears that the type must be set to "package" in order for
the dependency system to source the env.sh file
I'm working on getting this working with bedtools, and I'm wondering
what the recommended way to do this would be. Since there are various
binaries for this package, I'm thinking I could do something like:
Secondly, once this is sorted out, it would be nice to update the Tool
Config Syntax documentation. Thanks in advance for any advice.
Lance Parsons - Scientific Programmer
134 Carl C. Icahn Laboratory
Lewis-Sigler Institute for Integrative Genomics
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