Hi, Galaxy, Developers,
My name is Dan Sullivan and I work at the University of Chicago in the
newly-formed Center for Research Informatics. This is my first post
to this list, and I am a very new Galaxy user, so please be patient
with me :-) I have a question regarding an error I am reciecveing
when I try to start up galaxy for the first time. I think it might be
related to the older version of python I am running (2.4.3-46.el5). I
am running this on an RHEL 5 box and the output of "hg parent" command
shows 6799 as the chageset number. When I attempt to start galaxy for
the first time, I get the following traceback:
Traceback (most recent call last):
File "./scripts/paster.py", line 34, in ?
command.run()
File
"/opt/local/galaxy-dist/eggs/PasteScript-1.7.3-py2.4.egg/paste/script/command.py",
line 84, in run
invoke(command, command_name, options, args[1:])
File
"/opt/local/galaxy-dist/eggs/PasteScript-1.7.3-py2.4.egg/paste/script/command.py",
line 123, in invoke
exit_code = runner.run(args)
File
"/opt/local/galaxy-dist/eggs/PasteScript-1.7.3-py2.4.egg/paste/script/command.py",
line 218, in run
result = self.command()
File
"/opt/local/galaxy-dist/eggs/PasteScript-1.7.3-py2.4.egg/paste/script/serve.py",
line 276, in command
relative_to=base, global_conf=vars)
File
"/opt/local/galaxy-dist/eggs/PasteScript-1.7.3-py2.4.egg/paste/script/serve.py",
line 311, in loadapp
return loadapp(
File
"/opt/local/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.4.egg/paste/deploy/loadwsgi.py",
line 204, in loadapp
return loadobj(APP, uri, name=name, **kw)
File
"/opt/local/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.4.egg/paste/deploy/loadwsgi.py",
line 224, in loadobj
global_conf=global_conf)
File
"/opt/local/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.4.egg/paste/deploy/loadwsgi.py",
line 248, in loadcontext
global_conf=global_conf)
File
"/opt/local/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.4.egg/paste/deploy/loadwsgi.py",
line 278, in _loadconfig
return loader.get_context(object_type, name, global_conf)
File
"/opt/local/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.4.egg/paste/deploy/loadwsgi.py",
line 413, in get_context
section)
File
"/opt/local/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.4.egg/paste/deploy/loadwsgi.py",
line 458, in _context_from_explicit
value = import_string(found_expr)
File
"/opt/local/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.4.egg/paste/deploy/loadwsgi.py",
line 18, in import_string
return pkg_resources.EntryPoint.parse("x="+s).load(False)
File "/opt/local/galaxy-dist/lib/pkg_resources.py", line 1954, in load
entry = __import__(self.module_name, globals(),globals(), ['__name__'])
File "/opt/local/galaxy-dist/lib/galaxy/web/buildapp.py", line 19, in ?
from galaxy import config, jobs, util, tools
File "/opt/local/galaxy-dist/lib/galaxy/jobs/__init__.py", line 4, in ?
from galaxy import util, model
File "/opt/local/galaxy-dist/lib/galaxy/model/__init__.py", line 13, in ?
import galaxy.datatypes.registry
File "/opt/local/galaxy-dist/lib/galaxy/datatypes/registry.py", line 146
finally:
^
SyntaxError: invalid syntax
[dansully@pegasus tmp]$
Is this somthing that somebody could possibly commment on? Should I
just try to install a more recent version of python? Thank-you so
much for your help and guidance.
Dan Sullivan
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