Klaus,

I'm getting this too. I tried yesterday fro the first time to clean up my
local Galaxy data. (I was trying to purge all data and histories, ie. reset
the database to as-new). This is in a Galaxy download and install done on
12 March 2012. I'd give you the hg -heads/summary and some other stats but
I've deleted the dist. (I downloaded a complete new dist instead). I dodn't
use the update mentioned below.

Python is 2.6.1 on Mac OSX 10.6.8. Just checked,
sh delete_userless_histories.sh produces the same error in the latest dist.

Rgds,
Greg

On Wed, Apr 11, 2012 at 9:26 PM, Klaus Metzeler <m...@klaus-metzeler.de>wrote:

>
> Dear all,
>
> I have a problem with the cleanup scripts on my local galaxy instance.
> I am using the updated cleanup_datasets.py, as per Nate's earlier reply
> here
>
> http://gmod.827538.n3.nabble.com/Problem-running-purge-datasets-sh-cleanup-scripts-td3688016.html#none.<http://gmod.827538.n3.nabble.com/Problem-running-purge-datasets-sh-cleanup-scripts-td3688016.html#none>
>
> This is the output I get when running cleanup_datasets.py:
>
>  ~/ngs-bin/galaxy-dist $ scripts/cleanup_datasets/cleanup_datasets.py -d 2
> -6 -r
> Traceback (most recent call last):
>   File "scripts/cleanup_datasets/cleanup_datasets.py", line 524, in
> <module>
>     if __name__ == "__main__": main()
>   File "scripts/cleanup_datasets/cleanup_datasets.py", line 82, in main
>     ini_file = args[0]
> IndexError: list index out of range
>
> ... and this if I call it via the shell script cleanup_datasets.sh
>
> ~/ngs-bin/galaxy-dist $ scripts/cleanup_datasets/delete_datasets.sh
> Traceback (most recent call last):
>   File "./scripts/cleanup_datasets/cleanup_datasets.py", line 524, in
> <module>
>     if __name__ == "__main__": main()
>   File "./scripts/cleanup_datasets/cleanup_datasets.py", line 101, in main
>     app = CleanupDatasetsApplication( config )
>   File "./scripts/cleanup_datasets/cleanup_datasets.py", line 512, in
> __init__
>     self.model = galaxy.model.mapping.init( config.file_path,
> config.database_connection, engine_options={}, create_tables=False,
> object_store=self.object_store )
>   File
> "/home/klausmetzeler/ngs-bin/galaxy-dist/lib/galaxy/model/mapping.py", line
> 1818, in init
>     load_egg_for_url( url )
>   File
> "/home/klausmetzeler/ngs-bin/galaxy-dist/lib/galaxy/model/mapping.py", line
> 1798, in load_egg_for_url
>     dialect = guess_dialect_for_url( url )
>   File
> "/home/klausmetzeler/ngs-bin/galaxy-dist/lib/galaxy/model/mapping.py", line
> 1794, in guess_dialect_for_url
>     return (url.split(':', 1))[0]
> AttributeError: 'bool' object has no attribute 'split'
>
>
> Any idea what might be wrong?
> Thanks a lot for your support,
> Klaus
>
>
>
> ___________________________________________________________
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-- 
Greg Edwards,
Port Jackson Bioinformatics
gedwar...@gmail.com
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