On Apr 17, 2012, at 9:04 AM, Peter Cock wrote: > Hi all, > > Does anyone know what might have introduced this problem running > galaxy-dist when using the task splitting functionality? I'm using the > latest code from the default branch, changeset: 7027:f6e790d94282
Hi Peter, This was resolved in changeset 5c93ac32ace1. Thanks for reporting it. --nate > > galaxy.jobs.manager DEBUG 2012-04-17 13:55:03,610 (4) Job assigned to > handler 'main' > 127.0.0.1 - - [17/Apr/2012:13:55:06 +0100] "POST > /root/history_item_updates HTTP/1.1" 200 - > "http://127.0.0.1:8081/history"; "Mozilla/5.0 (X11; U; Linux x86_64; > en-US; rv:1.9.2.18) Gecko/20110622 CentOS/3.6-1.el5.centos > Firefox/3.6.18" > galaxy.jobs DEBUG 2012-04-17 13:55:08,710 (4) Working directory for > job is: /mnt/galaxy/galaxy-central/database/job_working_directory/000/4 > galaxy.jobs.handler DEBUG 2012-04-17 13:55:08,711 dispatching job 4 to > tasks runner > galaxy.jobs.handler INFO 2012-04-17 13:55:08,845 (4) Job dispatched > galaxy.datatypes.sequence DEBUG 2012-04-17 13:55:09,470 Split > /mnt/galaxy/galaxy-central/database/files/000/dataset_2.dat into 4 > parts... > galaxy.datatypes.sequence DEBUG 2012-04-17 13:55:09,470 Attemping to > split FASTA file > /mnt/galaxy/galaxy-central/database/files/000/dataset_2.dat into > chunks of 1 sequences > galaxy.datatypes.sequence DEBUG 2012-04-17 13:55:09,471 Writing > /mnt/galaxy/galaxy-central/database/files/000/dataset_2.dat part to > /mnt/galaxy/galaxy-central/database/job_working_directory/000/4/task_0/dataset_2.dat > galaxy.datatypes.sequence DEBUG 2012-04-17 13:55:09,472 Writing > /mnt/galaxy/galaxy-central/database/files/000/dataset_2.dat part to > /mnt/galaxy/galaxy-central/database/job_working_directory/000/4/task_1/dataset_2.dat > galaxy.jobs.splitters.multi DEBUG 2012-04-17 13:55:09,472 do_split > created 2 parts > galaxy.jobs DEBUG 2012-04-17 13:55:09,506 (4) Working directory for > job is: /mnt/galaxy/galaxy-central/database/job_working_directory/000/4 > galaxy.jobs.runners.tasks ERROR 2012-04-17 13:55:09,784 failure running job 4 > Traceback (most recent call last): > File "/mnt/galaxy/galaxy-central/lib/galaxy/jobs/runners/tasks.py", > line 86, in run_job > self.app.job_manager.dispatcher.put(tw) > AttributeError: 'JobManager' object has no attribute 'dispatcher' > > Thanks, > > Peter > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
