It's not clear what the problem is. Trackster will handle an arbitrarily large
number of contigs (albeit somewhat clumsily). What contig annotation data are
you trying to preserve and/or provide access to?
On Apr 19, 2012, at 11:30 AM, Oleksandr Moskalenko wrote:
> I needed to add a genome to the tracks in our local instance. However, the
> only available genome is a multi-fasta file of about 1800 supercontigs. I
> preserve the sanity of my clients I concatenated the fasta file and provided
> both versions. The unfortunate part is that the contig annotation data is
> lost in that conversion. I wonder if there is a way to extract the contig
> data as annotation and provide it as a default track in the concatenated
> genome or something like that. Any ideas?
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