Fantastic! Knowing that it's not coming from Galaxy is very helpful.
From: Jeremy Goecks [mailto:jeremy.goe...@emory.edu]
Sent: Thursday, April 19, 2012 1:56 PM
To: Dorset, Daniel C
Subject: Re: How to specify RUM output dir?
> yes: standard output: Broken pip
> yes: write error
> I know what this means, generally, but not in the context of Galaxy. Is this
> a telltale symptom, or is it too generic to say?
Hard to say, but it's coming from your script and is indeed causing your job to
fail. You might find it easier to debug if you run your tool/wrapper script
from the command line.
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