So, we updated our galaxy instance and now the genomic sequences can be
displayed, when sufficiently zoomed in and also the visualization can be saved
It looks really nice :-)
Thanks a lot for your help.
On Apr 18, 2012, at 6:10 PM, Jeremy Goecks wrote:
> Hi Naharajan,
> My best guess is that you've found some bugs. Fortunately, they are likely
> fixed in galaxy-central and will soon be available in galaxy-dist (we're
> planning an update in the next couple days). Once galaxy-dist is updated,
> please try updating your Galaxy instance and seeing if that fixes the
> If not, let us know and we can take a closer look.
> On Apr 18, 2012, at 9:05 AM, Naharajan Lakshmanaperumal wrote:
>> Dear all,
>> We have our own galaxy instance and the idea is to have trackster enabled
>> for users to be able to visualize NGS mapping. We were able to configure
>> trackster in our instance and the visualization works fine.
>> We have two questions regarding trackster:
>> 1) We can't display genomic sequences in trackster. As per the tutorial, we
>> set the location of the .2bit file in the twobit.loc file for the trackster
>> to be able to display the genomic sequence but for some reason it doesn't
>> display it. The name of the builds is the same in all places i.e) in
>> ucsc/chrom/builds.txt and also in the .loc files. Any ideas on what else
>> should be done?
>> 2) While saving the visualization, there is always an error message saying
>> "could not save visualization" and it doesn't seem to be a web browser
>> issue. How do we then save the visualization?
>> Thanks in advance,
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