This question is best directed to the galaxy development list, which I've cc'd.
In general, to integrate a tool into Galaxy, you'll want to write a tool
and then upload it to the Galaxy toolshed:
You can also upload workflows to the tool shed as well:
Feel free to email the galaxy-dev list with any questions you may have.
On Apr 23, 2012, at 3:51 PM, Deng, Xiangyu (CDC/OID/NCEZID) (CTR) wrote:
> Hi Jeremy,
> My name is Xiangyu, working across street at the enteric disease laboratory
> branch, CDC. I built a SNP calling pipeline and want to put it somewhere with
> a friendly GUI so our/other wet lab persons can use it. I wonder if I can do
> it on Galaxy.
> The pipeline, written in python, uses bowtie 2, samtools, velvet, biopython
> and a perl program.
> Xiang-yu Deng, Ph.D.
> ASM Fellow
> Enteric Diseases Laboratory Branch
> Division of Foodborne, Waterborne and Environmental Diseases
> National Center for Emerging and Zoonotic Infectious Diseases
> Centers for Disease Control and Prevention
> MS-C03, 1600 Clifton Road, Atlanta, GA 30333
> Office: 404-639-1036
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at: