Hi there,

I know  Galaxy already has a SAM-to-BAM converter, but part of my
exercise/task is to incorporate a script that uses samtools' view command.
I get this error:

[samopen] SAM header is present: 66338 sequences.

according to Galaxy. But this might not be an error at all. Is  there any
way that I could tell Galaxy to ignore this and just continue with the

Thanks in advance! Any help would be greatly appreciated.

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