I have had Galaxy running on a local BAS, and after success with that we're
ready to create an instance on our local cluster computing service. The local
cluster uses PBS/Torque.
I'm familiar with the basics of configuration, but our particular scheduler
rewards those who specify accurate walltimes. I would like to be able to define
specific walltimes for each tool. I'm mapping out a strategy for how best to
specify accurate walltimes. For instance, if someone is running tophat, it will
take longer if they're mapping against a complex reference genome like human,
as opposed to nematode. I'd like to use different walltimes to account for that.
Is there anyone who has tackled this and would be willing to share their
approach with me?
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at: