Sarah,

What tool was used to create the problematic dataset?

Thanks,
J.

On May 7, 2012, at 12:17 PM, Sarah Diehl wrote:

> Hi all,
> 
> I get the following error when I try to export a specific history to file:
> 
> 10.1.5.190 - - [07/May/2012:18:01:08 +0200] "GET /history/export_archive 
> HTTP/1.1" 500 - "http://galaxy.immunbio.mpg.de/"; "Mozilla/5.0 (X11; U; Linux 
> x86_64; en-US; rv:1.9.2.24) Gecko/20111108 Fedora/3.6.24-1.fc14 
> Firefox/3.6.24"
> Error - <type 'exceptions.TypeError'>: 
> <galaxy.tools.parameters.basic.UnvalidatedValue object at 0x8ba67d0> is not 
> JSON serializable
> URL: http://galaxy.immunbio.mpg.de/history/export_archive
> File 
> '/galaxy/galaxy_server/eggs/Paste-1.6-py2.7.egg/paste/exceptions/errormiddleware.py',
>  line 143 in __call__
>  app_iter = self.application(environ, start_response)
> File '/galaxy/galaxy_server/eggs/Paste-1.6-py2.7.egg/paste/recursive.py', 
> line 80 in __call__
>  return self.application(environ, start_response)
> File 
> '/galaxy/galaxy_server/eggs/Paste-1.6-py2.7.egg/paste/httpexceptions.py', 
> line 632 in __call__
>  return self.application(environ, start_response)
> File '/galaxy/galaxy_server/lib/galaxy/web/framework/base.py', line 160 in 
> __call__
>  body = method( trans, **kwargs )
> File '/galaxy/galaxy_server/lib/galaxy/web/controllers/history.py', line 678 
> in export_archive
>  history_exp_tool.execute( trans, incoming = params, set_output_hid = True )
> File '/galaxy/galaxy_server/lib/galaxy/tools/__init__.py', line 1517 in 
> execute
>  return self.tool_action.execute( self, trans, incoming=incoming, 
> set_output_hid=set_output_hid, history=history, **kwargs )
> File '/galaxy/galaxy_server/lib/galaxy/tools/actions/history_imp_exp.py', 
> line 106 in execute
>  include_deleted=incoming[ 'include_deleted' ] )
> File '/galaxy/galaxy_server/lib/galaxy/tools/imp_exp/__init__.py', line 428 
> in setup_job
>  jobs_attrs_out.write( to_json_string( jobs_attrs, 
> cls=HistoryDatasetAssociationEncoder ) )
> File 
> '/galaxy/galaxy_server/eggs/simplejson-2.1.1-py2.7-linux-x86_64-ucs2.egg/simplejson/__init__.py',
>  line 268 in dumps
> File 
> '/galaxy/galaxy_server/eggs/simplejson-2.1.1-py2.7-linux-x86_64-ucs2.egg/simplejson/encoder.py',
>  line 214 in encode
> File 
> '/galaxy/galaxy_server/eggs/simplejson-2.1.1-py2.7-linux-x86_64-ucs2.egg/simplejson/encoder.py',
>  line 282 in iterencode
> File '/galaxy/galaxy_server/lib/galaxy/tools/imp_exp/__init__.py', line 327 
> in default
>  return simplejson.JSONEncoder.default( self, obj )
> File 
> '/galaxy/galaxy_server/eggs/simplejson-2.1.1-py2.7-linux-x86_64-ucs2.egg/simplejson/encoder.py',
>  line 190 in default
> TypeError: <galaxy.tools.parameters.basic.UnvalidatedValue object at 
> 0x8ba67d0> is not JSON serializable
> 
> 
> I tracked the problem down to a single bed file. I copied it into a new empty 
> history and I can still not export this history to a file. This file doesn't 
> have any special characters in either its name, info or annotation. I can't 
> find anything special about this file...
> 
> Any help is greatly appreciated!
> 
> Best regards,
> Sarah
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