On May 3, 2012, at 3:42 PM, Dorset, Daniel C wrote:
> I have had Galaxy running on a local BAS, and after success with that we’re
> ready to create an instance on our local cluster computing service. The local
> cluster uses PBS/Torque.
> I’m familiar with the basics of configuration, but our particular scheduler
> rewards those who specify accurate walltimes. I would like to be able to
> define specific walltimes for each tool. I’m mapping out a strategy for how
> best to specify accurate walltimes. For instance, if someone is running
> tophat, it will take longer if they’re mapping against a complex reference
> genome like human, as opposed to nematode. I’d like to use different
> walltimes to account for that.
> Is there anyone who has tackled this and would be willing to share their
> approach with me?
This doesn't currently exist in Galaxy, but John Chilton at UMN has written
enhancements that do what you're looking for:
Unfortunately the patches no longer apply cleanly against galaxy-central, but I
will work on getting them integrated soon.
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and other Galaxy lists, please use the interface at: