On May 3, 2012, at 3:42 PM, Dorset, Daniel C wrote:

> I have had Galaxy running on a local BAS, and after success with that we’re 
> ready to create an instance on our local cluster computing service. The local 
> cluster uses PBS/Torque.
>  
> I’m familiar with the basics of configuration, but our particular scheduler 
> rewards those who specify accurate walltimes. I would like to be able to 
> define specific walltimes for each tool. I’m mapping out a strategy for how 
> best to specify accurate walltimes. For instance, if someone is running 
> tophat, it will take longer if they’re mapping against a complex reference 
> genome like human, as opposed to nematode. I’d like to use different 
> walltimes to account for that.
>  
> Is there anyone who has tackled this and would be willing to share their 
> approach with me?

Hi Dan,

This doesn't currently exist in Galaxy, but John Chilton at UMN has written 
enhancements that do what you're looking for:

  
https://bitbucket.org/galaxy/galaxy-central/pull-request/12/dynamic-job-runners

Unfortunately the patches no longer apply cleanly against galaxy-central, but I 
will work on getting them integrated soon.

--nate

>  
> Thanks!
>  
> Dan
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