Dear Galaxy Community,

The May 11, 2012 Galaxy Distribution has been released at: http://bitbucket.org/galaxy/galaxy-dist/


Complete News Brief <http://wiki.g2.bx.psu.edu/DevNewsBriefs/2012_05_11>


*Highlights:*

* *EMBOSS* tools and datatypes have now moved from the _/Galaxy distribution/_ <http://bitbucket.org/galaxy/galaxy-dist/> to the /Galaxy Main Tool Shed/ <http://toolshed.g2.bx.psu.edu>.

* Tool Integration Tests <http://wiki.g2.bx.psu.edu/Tool%20Shed#Using_Galaxy.27s_functional_test_framework_to_test_tools_installed_into_your_local_Galaxy_instance>, Custom Tool Panel Configuration <http://wiki.g2.bx.psu.edu/Tool%20Shed#Managing_the_layout_of_your_Galaxy_tool_panel>, and Configurable Tool Output Locations <http://wiki.g2.bx.psu.edu/Admin/Tools/Multiple%20Output%20Files>.

* Improved Multiprocess Job Handling <http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Web%20Application%20Scaling> and Enhanced OpenID <http://openid.net> Support.

* GATK <http://www.broadinstitute.org/gsa/wiki> version 1.4, FreeBayes <http://github.com/ekg/freebayes>, Updated *Megablast* using NCBI BLAST+ <http://blast.ncbi.nlm.nih.gov/Blast.cgi>, Trinity <http://trinityrnaseq.sourceforge.net>, WormBase 2 <http://www.wormbase.org>, and IGB <http://bioviz.org/igb/index.html> external display.

* Trackster <http://wiki.g2.bx.psu.edu/Learn/Visualization> upgrades include /strand coloring/, /interval datatype support/, and /tabix indexing/ (fast!!).

* Updated *User Interface*, *Workflow-API* upgrades, and *Custom UCSC Display*.


*http://getgalaxy.org*

*new*:              % hg clone http://www.bx.psu.edu/hg/galaxy galaxy-dist
*upgrade*:     % hg pull -u -r 17d57db9a7c0


/Thanks for using Galaxy!/

Jennifer Jackson
Galaxy Team <http://wiki.g2.bx.psu.edu/Galaxy%20Team>
http://galaxyproject.org
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

  http://lists.bx.psu.edu/

Reply via email to