On May 16, 2012, at 5:15 AM, julie dubois wrote:

> Hi,
> I 've installed Galaxy on Ubuntu 12.04 with apache2 and MySQL
> I've configured apache 2 with this lines on file 
> /etc/apache2/sites-available/default between  <VirtualHost> and 
> </VirtualHost> :
> 
> <Proxy "http://localhost:8080";>
> 
>     Order Deny,Allow
>     Allow from all
> </Proxy>
> RewriteEngine on
> RewriteRule ^/galaxy$ /galaxy/ [R]
> RewriteRule ^/galaxy/static/style/(.*) 
> /home/chevalier/galaxy-dist/static/june_2007_style/blue/$1 [L]
> RewriteRule ^/galaxy/static/scripts/(.*) 
> /home/chevalier/galaxy-dist/static/scripts/packed/$1 [L]
> RewriteRule ^/galaxy/static/(.*) /home/chevalier/galaxy-dist/static/$1 [L]
> RewriteRule ^/galaxy/favicon.ico 
> /home/chevalier/galaxy-dist/static/favicon.ico [L]
> RewriteRule ^/galaxy/robots.txt /home/chevalier/galaxy-dist/static/robots.txt 
> [L]
> RewriteRule ^/galaxy/(.*) http://localhost:8080$1 [P] 
> 
> 
> I've configured my MYSQL with a user who have all privilegies on a database 
> and in the universe_wsgi.ini the connection database appears like this :
> 
> database_connection = 
> mysql://cistrome:cistrome@localhost:/var/run/mysqld/mysqld.sock/cistromeap
> 
> 
> After running sh run.sh in my galaxy directory, I obtain this error message :
> ....
> File 
> "/home/chevalier/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.7.egg/sqlalchemy/engine/url.py",
>  line 49, in __init__
>     self.port = int(port)
> ValueError: invalid literal for int() with base 10: ' '
> 
> This is the case too when I run this with root privilegies.
> Is it an error in my configuration of apache 2 or in MySQL ? Or is it an 
> error in my universe_wgsi.ini ?

Hi Julie,

It looks like the 'port =' option in universe.wsgi.ini is uncommented and set 
to a blank value.  Try setting it to 8080 (or comment it back out since 8080 is 
the default).

--nate

> 
> Thank you
> 
> Julie
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
> 
>  http://lists.bx.psu.edu/


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

  http://lists.bx.psu.edu/

Reply via email to