I've successfully configured a local galaxy instance to submit jobs to our 
local cluster, but have a question regarding setting PBS options such as the 
number of nodes and processors to use. I've followed the guide here: 


Is there any way to do this in a tool-specific manner. For example, for running 
tophat to do a mapping run, I would want it to use 24 CPUs, but for simply 
converting a file type I would want only 1 CPU requested. Is there a way to 
specify this somewhere? 



-- Jason Greenbaum, Ph.D. 
Manager, Bioinformatics Core | jgb...@liai.org 
La Jolla Institute for Allergy and Immunology 

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