Hi Greg,

thanks! I can confirm that it is working now. I can upload new
datatypes.
What is not working is the update of such tools from the toolshed.
I get the following error.

URL:
http://localhost/toolshed/repository/check_for_updates?galaxy_url=http://localhost/&name=molecule_datatypes&owner=admin&changeset_revision=2a638740087d&webapp=galaxy&no_reset=true
Module paste.exceptions.errormiddleware:143 in __call__
>>  app_iter = self.application(environ, start_response)
Module paste.debug.prints:98 in __call__
>>  environ, self.app)
Module paste.wsgilib:539 in intercept_output
>>  app_iter = application(environ, replacement_start_response)
Module paste.recursive:80 in __call__
>>  return self.application(environ, start_response)
Module paste.httpexceptions:632 in __call__
>>  return self.application(environ, start_response)
Module galaxy.web.framework.base:160 in __call__
>>  body = method( trans, **kwargs )
Module galaxy.webapps.community.controllers.repository:684 in
check_for_updates
>>  url += '&latest_ctx_rev=%s' % str( latest_ctx.rev() )
UnboundLocalError: local variable 'latest_ctx' referenced before
assignment

Removing and installing works fine.
If you need more information to track that bug done, let me know.

Cheers,
Bjoern


> Hello Bjoern,
> 
> This should be resolved in change set 7211:16a93eb6eaf6, which is available 
> from our central repository.  Thanks for reporting this, and please let me 
> know if you encounter additional issues.
> 
> Greg Von Kuster
> 
> 
> On May 26, 2012, at 10:51 AM, Björn Grüning wrote:
> 
> > Hi,
> > 
> > has anyone encountered that problem or has an idea how to solve it?
> > 
> > Traceback (most recent call last):
> >  File "/home/ctb/galaxy-dist/lib/galaxy/web/buildapp.py", line 82, in
> > app_factory
> >    app = UniverseApplication( global_conf = global_conf, **kwargs )
> >  File "/home/ctb/galaxy-dist/lib/galaxy/app.py", line 64, in __init__
> >    self.installed_repository_manager.load_proprietary_datatypes()
> >  File "/home/ctb/galaxy-dist/lib/galaxy/tool_shed/__init__.py", line
> > 26, in load_proprietary_datatypes
> >    load_datatype_items( self.app, tool_shed_repository,
> > relative_install_dir )
> >  File "/home/ctb/galaxy-dist/lib/galaxy/util/shed_util.py", line 1036,
> > in load_datatype_items
> >    app.datatypes_registry.load_datatype_converters( app.toolbox,
> > installed_repository_dict=repository_dict, deactivate=deactivate )
> > AttributeError: 'UniverseApplication' object has no attribute 'toolbox'
> > 
> > All files are in one repository ... xml, the python-class und the
> > converters. I was able to successfully upload it to our test-toolshed
> > but after installing it (also successfully) galaxy is not able to start.
> > Also the converters are recognised as tools in the toolshed is that
> > intended?
> > 
> > Thanks!
> > Bjoern
> > 
> > ___________________________________________________________
> > Please keep all replies on the list by using "reply all"
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> > 
> >  http://lists.bx.psu.edu/
> 

-- 
Björn Grüning
Albert-Ludwigs-Universität Freiburg
Institute of Pharmaceutical Sciences
Pharmaceutical Bioinformatics
Hermann-Herder-Strasse 9
D-79104 Freiburg i. Br.

Tel.:  +49 761 203-4872
Fax.:  +49 761 203-97769
E-Mail: bjoern.gruen...@pharmazie.uni-freiburg.de
Web: http://www.pharmaceutical-bioinformatics.org/

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