Thanks!  That worked.

On Mon, Jun 11, 2012 at 2:41 AM, Hans-Rudolf Hotz <h...@fmi.ch> wrote:

> Hi Larry
>
> Have you added "mm10    Mouse Dec. 2011 (GRCm38/mm10) (mm10)" to
>
>  ~/galaxy_dist/tool-data/**shared/ucsc/builds.txt
>
> and restarted the server?
>
>
> Regards, Hans
>
>
>
>
> On 06/08/2012 06:19 PM, Larry Helseth wrote:
>
>> I'm trying to add mm10 to a Galaxy instance built using Mercurial on May
>> 31st (using Postgres). I've added the .fa file, prepared bwa, bowtie,
>> samtool indexes, etc., edited all of the .loc files for individual tools
>> and restarted the server daemon. mm10 appears in the list of genomes
>> available for these tools but doesn't appear in the list of all genomes
>> when I try uploading a file (Get Data/Upload File from your computer) OR
>> when I try adding the file through the admin library interface
>> (Administration/Data/Manage libraries/Add datasets). I tried editing
>> ~/galaxy-dist/scripts/loc_**files/create_all_fasta_loc.py to add a line
>> for "mm10". restarting Galaxy but that genome still doesn't appear in
>> the list.
>> Do I need to edit an entry in Postgres? When I restart Galaxy without
>> the daemon mode (or tail the paster.log) I see that clicking on Get
>> Data/Upload File is calling GET /tool_runner?tool_id=upload1 for the <my
>> URL>/root/tool_menu.
>> Am I supposed to upload new genomes through the Library?
>> screencast.g2.bx.psu.edu 
>> <http://screencast.g2.bx.psu.**edu<http://screencast.g2.bx.psu.edu>>
>> is still down
>>
>> so I can't watch the video tutorials about configuring custom genomes.
>> I'd appreciate any suggestions. Thanks in advance!
>> Adios,
>> Larry
>>
>> Larry Helseth, Ph.D.
>>
>> Center for Molecular Medicine
>>
>> NorthShore University HealthSystem
>>
>> Evanston, IL
>>
>>
>>
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