Changeset 7300:f197c4346cc4, which is currently available in galaxy-central,
should allow the external display applications to work when require_login =
True, thanks for reporting this error. Please let us know if you encounter
Thanks for using Galaxy,
On Jun 22, 2012, at 3:48 AM, Rob Syme wrote:
> The problem seems to be in the lack of authentication by the request sent by
> IGV. The galaxy instance is set to require a username and password with
> "require_login = True" in universe_wsgi.ini, which means that when IGV
> attempts to download the BAM file at
> galaxy redirects to the login page.
> I tried to remove the authentication requiements with the apache config (as
> <LocationMatch display_application/[a-zA-Z0-9]+/igv.*>
> RequestHeader set REMOTE_USER igv_disp...@example.org
> Satisfy Any
> Order deny,allow
> Allow from all
> But it didn't help.
> Commenting out the "require_login = True" line allows IGV to connect and
> download the bam file without issue.
> I've now got IGV crashing when trying to access this BAM file, but that's
> probably a question for their list.
> On Fri, Jun 22, 2012 at 2:16 PM, Rob Syme <rob.s...@gmail.com> wrote:
> Sorry, the subject should read "mistakenly routed to root". The question
> still stands.
> On Fri, Jun 22, 2012 at 2:10 PM, Rob Syme <rob.s...@gmail.com> wrote:
> Galaxy type: local
> I'm trying to get IGV to download files served from the galaxy instance
> through "display_application".
> When IGV makes a request for the BAM file, it is re-routed to root like so:
> --2012-06-22 13:58:00--
> Connecting to example.org:80... connected.
> HTTP request sent, awaiting response... 302 Found
> --2012-06-22 13:58:00--
> Reusing existing connection to example.org:80.
> HTTP request sent, awaiting response... 200 OK
> Length: unspecified [text/html]
> Saving to: 'galaxy_e2132aef71b11dbf.bam.1'
> [ <=>
> ] 27,581 --.-K/s
> in 0s
> 2012-06-22 13:58:00 (146 MB/s) - 'galaxy_e2132aef71b11dbf.bam.1' saved 
> Giving us a text/html page rather than the BAM file.
> I see that I'm not the first person to run into this:
> http://lists.bx.psu.edu/pipermail/galaxy-dev/2011-December/007901.html but
> I'm still not really sure how to solve the problem.
> I'm no sysadmin, so my apache config skills are very patchy. My config is up
> at https://gist.github.com/2970592. Any help would be very much appreciated.
> Rob Syme
> PhD Student
> Curtin University
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