Hi Greg,

1. changeset:   7284:87be4c8d7f7f
2. <toolbox tool_path="./shed_tools">
3. yes, the latest

Solved! I noticed that my tool_path was different from yours. After 
setting it to ../shed_tools it installed correctly.

Thanks!

On 07/02/2012 09:41 PM, Greg Von Kuster wrote:
> Hello Matthias,
>
> I've just updated the tool shed to changeset revision 7332:e54f7684c919 and 
> I've successfully installed the mothur toolsuite.   This revision includes a 
> fix that may be related to the issue you encountered.  However, before you 
> try reinstalling, can you reply with answers to each of the following?  This 
> will help me know what steps you'll need to take before attempting the 
> installation.  I'll reply back with what steps you should take as soon as I 
> hear from you.
>
> 1. What changeset revision are you running on your Galaxy instance?
>
> 2. What is the setting for tool_path in your shed_tool_conf.xml file - is it 
> the default of ../shed_tools ?
>
> 3. What changeset revision of the mothur tool suite were you trying to 
> install - is the the tip of 5c77423823cb in the main tool shed?
>
> Thanks!
>
> Greg Von Kuster
>
>
> On Jul 2, 2012, at 10:57 AM, Hollander, Mattias de wrote:
>
>> Hi,
>>
>> I am trying to install the mothur toolsuite via the toolshed but this
>> returns in an HTTP 500 error:
>>
>> URL:
>> http://galaxy.nioo.knaw.nl/admin_toolshed/install_repository?tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&install_tool_dependencies=&repo_info_dict=ea2e290f2209f91ca1303230f6223b698a53945f%3A7b226d6f746875725f746f6f6c7375697465223a205b224d6f74687572206d65746167656e6f6d69637320636f6d6d616e64732061732047616c61787920746f6f6c73222c2022687474703a2f2f746f6f6c736865642e67322e62782e7073752e6564752f7265706f732f6a6a6f686e736f6e2f6d6f746875725f746f6f6c7375697465222c2022323964623862363138346561222c20223130225d7d&includes_tools=True
>> File
>> '/usr/local/lib/python2.7/dist-packages/Paste-1.7.5.1-py2.7.egg/paste/exceptions/errormiddleware.py',
>> line 144 in __call__
>>    app_iter = self.application(environ, sr_checker)
>> File
>> '/usr/local/lib/python2.7/dist-packages/Paste-1.7.5.1-py2.7.egg/paste/debug/prints.py',
>> line 106 in __call__
>>    environ, self.app)
>> File
>> '/usr/local/lib/python2.7/dist-packages/Paste-1.7.5.1-py2.7.egg/paste/wsgilib.py',
>> line 543 in intercept_output
>>    app_iter = application(environ, replacement_start_response)
>> File
>> '/usr/local/lib/python2.7/dist-packages/Paste-1.7.5.1-py2.7.egg/paste/recursive.py',
>> line 84 in __call__
>>    return self.application(environ, start_response)
>> File
>> '/usr/local/lib/python2.7/dist-packages/Paste-1.7.5.1-py2.7.egg/paste/httpexceptions.py',
>> line 633 in __call__
>>    return self.application(environ, start_response)
>> File
>> '/home/galaxyTools/galaxy-central/lib/galaxy/web/framework/base.py',
>> line 160 in __call__
>>    body = method( trans, **kwargs )
>> File
>> '/home/galaxyTools/galaxy-central/lib/galaxy/web/framework/__init__.py',
>> line 184 in decorator
>>    return func( self, trans, *args, **kwargs )
>> File
>> '/home/galaxyTools/galaxy-central/lib/galaxy/web/controllers/admin_toolshed.py',
>> line 451 in install_repository
>>    clone_repository( repository_clone_url, os.path.abspath(
>> relative_install_dir ), ctx_rev )
>> File '/home/galaxyTools/galaxy-central/lib/galaxy/util/shed_util.py',
>> line 286 in clone_repository
>>    rev=[ ctx_rev ] )
>> File
>> '/home/galaxyTools/galaxy-central/eggs/mercurial-2.1.2-py2.7-linux-x86_64-ucs4.egg/mercurial/commands.py',
>> line 1157 in clone
>>    branch=opts.get('branch'))
>> File
>> '/home/galaxyTools/galaxy-central/eggs/mercurial-2.1.2-py2.7-linux-x86_64-ucs4.egg/mercurial/hg.py',
>> line 350 in clone
>>    destrepo.clone(srcrepo, heads=revs, stream=stream)
>> File
>> '/home/galaxyTools/galaxy-central/eggs/mercurial-2.1.2-py2.7-linux-x86_64-ucs4.egg/mercurial/localrepo.py',
>> line 2280 in clone
>>    return self.pull(remote, heads)
>> File
>> '/home/galaxyTools/galaxy-central/eggs/mercurial-2.1.2-py2.7-linux-x86_64-ucs4.egg/mercurial/localrepo.py',
>> line 1582 in pull
>>    remotephases = remote.listkeys('phases')
>> File
>> '/home/galaxyTools/galaxy-central/eggs/mercurial-2.1.2-py2.7-linux-x86_64-ucs4.egg/mercurial/wireproto.py',
>> line 115 in plain
>>    encresref.set(self._submitone(f.func_name, encargsorres))
>> File
>> '/home/galaxyTools/galaxy-central/eggs/mercurial-2.1.2-py2.7-linux-x86_64-ucs4.egg/mercurial/wireproto.py',
>> line 163 in _submitone
>>    return self._call(op, **args)
>> File
>> '/home/galaxyTools/galaxy-central/eggs/mercurial-2.1.2-py2.7-linux-x86_64-ucs4.egg/mercurial/httprepo.py',
>> line 169 in _call
>>    fp = self._callstream(cmd, **args)
>> File
>> '/home/galaxyTools/galaxy-central/eggs/mercurial-2.1.2-py2.7-linux-x86_64-ucs4.egg/mercurial/httprepo.py',
>> line 117 in _callstream
>>    resp = self.urlopener.open(req)
>> File '/usr/lib/python2.7/urllib2.py', line 397 in open
>>    response = meth(req, response)
>> File '/usr/lib/python2.7/urllib2.py', line 510 in http_response
>>    'http', request, response, code, msg, hdrs)
>> File '/usr/lib/python2.7/urllib2.py', line 435 in error
>>    return self._call_chain(*args)
>> File '/usr/lib/python2.7/urllib2.py', line 369 in _call_chain
>>    result = func(*args)
>> File '/usr/lib/python2.7/urllib2.py', line 518 in http_error_default
>>    raise HTTPError(req.get_full_url(), code, msg, hdrs, fp)
>> HTTPError: HTTP Error 500: Internal Server Error
>>
>> Any ideas how to fix this?
>>
>> Thanks!


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