On Jul 12, 2012, at 3:52 AM, Di Pe wrote:
> Hi,
>
> I checked out a brand new galaxy-dist to galaxy-runtest
>
> I noticed that in order to run it one needs to bootstrap some of the
> sample files.
>
> galaxdev@galaxy1:~/galaxy-runtest$ cp tool_data_table_conf.xml.sample
> tool_data_table_conf.xml
> galaxdev@galaxy1:~/galaxy-runtest$ cp datatypes_conf.xml.sample
> datatypes_conf.xml
> galaxdev@galaxy1:~/galaxy-runtest$ cp migrated_tools_conf.xml.sample
> migrated_tools_conf.xml
>
> galaxdev@galaxy1:~/galaxy-runtest$ ./run_functional_tests.sh
>
>
> checking how many successes and errors we get :
>
> petersen@lamprey:~$ grep -c "Status:</span> success"
> /home/galaxdev/galaxy-runtest/run_functional_tests.html
> 138
>
> petersen@lamprey:~$ grep -c "Status:</span> error"
> /home/galaxdev/galaxy-runtest/run_functional_tests.html
> 587
>
> the first 20ish tests work but then I am getting the error below. Is
> this normal?
>
> thanks
> dipe
Hi,
The functional tests, especially for tools, won't work unless you've installed
all of the tool dependencies. However, this error (regarding hg17) can most
likely be fixed by copying the UCSC build.txt sample:
cp tool-data/shared/ucsc/builds.txt.sample tool-data/shared/ucsc/builds.txt
--nate
>
>
>
> functional.test_get_data.UploadData.test_0010_upload_file
>
>
> Traceback (most recent call last):
>
> File "/usr/lib/python2.7/unittest/case.py", line 327, in run
> testMethod()
>
> File "/home/galaxdev/galaxy-runtest/test/functional/test_get_data.py",
> line 36, in test_0010_upload_file
> self.upload_file( '4.bed.gz', dbkey='hg17', ftype='bed' )
>
> File "/home/galaxdev/galaxy-runtest/test/base/twilltestcase.py",
> line 194, in upload_file
> tc.fv("1","dbkey", dbkey)
>
> File
> "/home/galaxdev/galaxy-runtest/eggs/twill-0.9-py2.7.egg/twill/commands.py",
> line 450, in formvalue
> set_form_control_value(control, value)
>
> File "/home/galaxdev/galaxy-runtest/eggs/twill-0.9-py2.7.egg/twill/utils.py",
> line 190, in set_form_control_value
> raise ClientForm.ItemNotFoundError('cannot find value/label "%s"
> in list control' % (val,))
>
> ItemNotFoundError: cannot find value/label "hg17" in list control
> -------------------- >> begin captured stdout << ---------------------
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