On Jul 6, 2012, at 12:32 PM, Iry Witham wrote: > I am having an issue with pbs_python loading, but not submitting jobs to the > cluster. > > The first issue is that when I ran 'LIBTORQUE_DIR=/usr/local/lib/ python > scripts/scramble.py –e pbs_python' it failed to generate the pbs_python egg > in the /galaxy-dist/eggs/ directory. > > Secondly I copied the pbs_python-4.1.0-py2.6-linux-x86_64-ucs4.egg from my > production galaxy server and restarted my test server. It appears to start, > but when I attempt to run anything it uses the local runner and fails. The > runner0.log shows the pbsjobrunner is loaded is below: > > galaxy.jobs.handler DEBUG 2012-07-06 10:08:45,681 Loaded job runner: > galaxy.jobs.runners.pbs:PBSJobRunner > galaxy.jobs.handler INFO 2012-07-06 10:08:45,682 job handler stop queue > started > galaxy.jobs.manager INFO 2012-07-06 10:08:45,687 job manager queue started > galaxy.jobs.manager INFO 2012-07-06 10:08:45,688 job manager stop queue > started > galaxy.jobs.handler INFO 2012-07-06 10:08:45,692 job handler queue started > > I can't seem to get past this point since I upgraded. Can someone point me > in the right direction?
Hi Iry, Did you set default_cluster_job_runner in universe_wsgi.ini? --nate > > Thanks, > Iry > > The information in this email, including attachments, may be confidential and > is intended solely for the addressee(s). If you believe you received this > email by mistake, please notify the sender by return email as soon as > possible. > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
