Hi Nate,

        I have set this as shown below:


# The URL for the default runner to use when a tool doesn't explicitly
define a
# runner below.
default_cluster_job_runner = pbs:////-l nodes=1:ppn=1,walltime=20:00:00


Iry

On 7/12/12 4:29 PM, "Nate Coraor" <n...@bx.psu.edu> wrote:

>On Jul 6, 2012, at 12:32 PM, Iry Witham wrote:
>
>> I am having an issue with pbs_python loading, but not submitting jobs
>>to the cluster.  
>> 
>> The first issue is that when I ran 'LIBTORQUE_DIR=/usr/local/lib/
>>python scripts/scramble.py ­e pbs_python' it failed to generate the
>>pbs_python egg in the /galaxy-dist/eggs/ directory.
>> 
>> Secondly I copied the pbs_python-4.1.0-py2.6-linux-x86_64-ucs4.egg from
>>my production galaxy server and restarted my test server.  It appears to
>>start, but when I attempt to run anything it uses the local runner and
>>fails.  The runner0.log shows the pbsjobrunner is loaded is below:
>> 
>> galaxy.jobs.handler DEBUG 2012-07-06 10:08:45,681 Loaded job runner:
>>galaxy.jobs.runners.pbs:PBSJobRunner
>> galaxy.jobs.handler INFO 2012-07-06 10:08:45,682 job handler stop queue
>>started
>> galaxy.jobs.manager INFO 2012-07-06 10:08:45,687 job manager queue
>>started
>> galaxy.jobs.manager INFO 2012-07-06 10:08:45,688 job manager stop queue
>>started
>> galaxy.jobs.handler INFO 2012-07-06 10:08:45,692 job handler queue
>>started
>> 
>> I can't seem to get past this point since I upgraded.  Can someone
>>point me in the right direction?
>
>Hi Iry,
>
>Did you set default_cluster_job_runner in universe_wsgi.ini?
>
>--nate
>
>> 
>> Thanks,
>> Iry
>> 
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