On Jul 13, 2012, at 2:52 PM, Iry Witham wrote:
> Will the runner0.log or web0.log be sufficient? If not what would you
> like?
If you have updated to a relatively recent version of Galaxy, be sure that you
updated to the web/manager/handler configuration from the web/runner
configuration:
http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Web%20Application%20Scaling
Once you've done this, if there are still problems, send the manager/handler
logs.
--nate
>
> Iry
>
> On 7/13/12 2:23 PM, "Nate Coraor" <n...@bx.psu.edu> wrote:
>
>> On Jul 13, 2012, at 9:05 AM, Iry Witham wrote:
>>
>>> Hi Nate,
>>>
>>> I have set this as shown below:
>>>
>>>
>>> # The URL for the default runner to use when a tool doesn't explicitly
>>> define a
>>> # runner below.
>>> default_cluster_job_runner = pbs:////-l nodes=1:ppn=1,walltime=20:00:00
>>
>> This should be okay. Could you send along the server output from startup
>> to job completion?
>>
>> --nate
>>
>>>
>>>
>>> Iry
>>>
>>> On 7/12/12 4:29 PM, "Nate Coraor" <n...@bx.psu.edu> wrote:
>>>
>>>> On Jul 6, 2012, at 12:32 PM, Iry Witham wrote:
>>>>
>>>>> I am having an issue with pbs_python loading, but not submitting jobs
>>>>> to the cluster.
>>>>>
>>>>> The first issue is that when I ran 'LIBTORQUE_DIR=/usr/local/lib/
>>>>> python scripts/scramble.py e pbs_python' it failed to generate the
>>>>> pbs_python egg in the /galaxy-dist/eggs/ directory.
>>>>>
>>>>> Secondly I copied the pbs_python-4.1.0-py2.6-linux-x86_64-ucs4.egg
>>>>> from
>>>>> my production galaxy server and restarted my test server. It appears
>>>>> to
>>>>> start, but when I attempt to run anything it uses the local runner and
>>>>> fails. The runner0.log shows the pbsjobrunner is loaded is below:
>>>>>
>>>>> galaxy.jobs.handler DEBUG 2012-07-06 10:08:45,681 Loaded job runner:
>>>>> galaxy.jobs.runners.pbs:PBSJobRunner
>>>>> galaxy.jobs.handler INFO 2012-07-06 10:08:45,682 job handler stop
>>>>> queue
>>>>> started
>>>>> galaxy.jobs.manager INFO 2012-07-06 10:08:45,687 job manager queue
>>>>> started
>>>>> galaxy.jobs.manager INFO 2012-07-06 10:08:45,688 job manager stop
>>>>> queue
>>>>> started
>>>>> galaxy.jobs.handler INFO 2012-07-06 10:08:45,692 job handler queue
>>>>> started
>>>>>
>>>>> I can't seem to get past this point since I upgraded. Can someone
>>>>> point me in the right direction?
>>>>
>>>> Hi Iry,
>>>>
>>>> Did you set default_cluster_job_runner in universe_wsgi.ini?
>>>>
>>>> --nate
>>>>
>>>>>
>>>>> Thanks,
>>>>> Iry
>>>>>
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>
>
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