HI!

I'am usig Galaxy-dist.

SO I have done the test again, I did a simple scrolling to visualize by the
Trackster the different  chromosome regions and then the galaxy crashed
suddenly.

Here Above what java script log looks :

22%2C%22exon_number%22%2C%22frac%22%2C%22cov%22%2C%22conf_lo%22%2C%22FPKM%22%2C%22conf_hi%22%5DFailed
to load resource
http://xxx.xxxxx.com/tracks/data?chrom=chr19&low=1449105&high=1449853&mode=Pack&resolution=1.8693312836279785&dataset_id=7350596ac236c69d&hda_ldda=hda&filter_cols=%5B%22Mapping+Quality%22%5DFailedto
load resource

However The paster.log looks more talking this time :

xx.xx.xxx.xxx - - [19/Jul/2012:16:46:33 +0200] "GET
/tracks/data?chrom=chr19&low=1457332&high=1458266&mode=Pack&resolution=2.3339731285988483&dataset_id=2a8867ca0da68ac1&hda_ldda=hda&filter_cols=%5B%22Score%22%2C%22exon_number%22%2C%22frac%22%2C%22cov%22%2C%22conf_lo%22%2C%22FPKM%22%2C%22conf_hi%22%5D
HTTP/1.1" 200 - "http://xxxx.xxxx.com/tracks/browser?id=df7a1f0c02a5b08e";
"Mozilla/5.0 (X11; Linux i686) AppleWebKit/535.19 (KHTML, like Gecko)
Ubuntu/12.04 Chromium/18.0.1025.168 Chrome/18.0.1025.168 Safari/535.19"
xx.xx.xxx.xxx - - [19/Jul/2012:16:46:33 +0200] "GET
/tracks/data?chrom=chr19&low=1457332&high=1458266&mode=Auto&resolution=2.3339731285988483&dataset_id=18644201db609b11&hda_ldda=hda&filter_cols=%5B%22Score%22%5D
HTTP/1.1" 200 - "http://xxxx.xxxx.com/tracks/browser?id=df7a1f0c02a5b08e";
"Mozilla/5.0 (X11; Linux i686) AppleWebKit/535.19 (KHTML, like Gecko)
Ubuntu/12.04 Chromium/18.0.1025.168 Chrome/18.0.1025.168 Safari/535.19"
xx.xx.xxx.xxx - - [19/Jul/2012:16:46:33 +0200] "GET
/tracks/data?chrom=chr19&low=1457332&high=1458266&mode=Pack&resolution=2.3339731285988483&dataset_id=7350596ac236c69d&hda_ldda=hda&filter_cols=%5B%22Mapping+Quality%22%5D
HTTP/1.1" 500 - "http://xxxx.xxxx.com/tracks/browser?id=df7a1f0c02a5b08e";
"Mozilla/5.0 (X11; Linux i686) AppleWebKit/535.19 (KHTML, like Gecko)
Ubuntu/12.04 Chromium/18.0.1025.168 Chrome/18.0.1025.168 Safari/535.19"
Error - <type 'exceptions.IOError'>: could not open index
`/srv/Galaxy/Galaxy_test/database/files/_metadata_files/000/metadata_75.dat`


2012/7/19 Jeremy Goecks <jeremy.goe...@emory.edu>

> JavaScript logs are found in the Web browser. For Safari/Chrome, see the
> View --> Developer --> JavaScript console option; for Firefox, see Tools
> --> Web Developer --> Web Console.
>
> The fact that the Paster log isn't showing errors is problematic. Are
> there certain scenarios where Trackster/Galaxy is more likely to crash?
> Finally, are you using galaxy-dist or galaxy-central?
>
> Best,
> J.
>
>
> On Jul 18, 2012, at 8:50 AM, Chebbi Mohamed Amine wrote:
>
>
>
> ---------- Forwarded message ----------
> From: Chebbi Mohamed Amine <chebbimam...@gmail.com>
> Date: 2012/7/18
> Subject: Re: [galaxy-dev] Galaxy crach while visualization
> To: Jeremy Goecks <jeremy.goe...@emory.edu>
>
>
> Hello Jeremy!
> Thanks for your response. Yes the paster.log is not complaining. Excuse me
> where I can found the javascript log. In /var/log I haven't any file
> related to javascript.log.
> Thanks
> Amine
>
>
> 2012/7/17 Jeremy Goecks <jeremy.goe...@emory.edu>
>
>> Hello Amine,
>>
>> The paster log looks normal, and Postgre log is standard given the crash.
>> Was there anything out of the ordinary that you can spot in the paster log
>> and/or Javascript log in your Web browser?
>>
>> Thanks,
>> J.
>>
>> On Jul 17, 2012, at 6:53 AM, Chebbi Mohamed Amine wrote:
>>
>> Hello Galaxy team !
>>
>> I have e strange problem whith my Galaxy trackster visualization . While
>> viewing bookmarked regions in my visualisation the whole
>> Galaxy process crashed and needed to be restarted, mainly when I use
>> Chrome browser.
>>
>> Above the Paster.log :
>>
>> xxx.xxx.xx.xxx, xxx.xx.xx.x - - [12/Jul/2012:12:56:36 +0200] "GET
>> /galaxy/tracks/data?chrom=chr19&low=1183972&high=1185154&mode=Auto&resolution=2.954022988505747&dataset_id=f4b17be90d9b3c9d&hda_ldda=hda&filter_cols=%5B%22Score%22%5D
>> HTTP/1.1" 200 - "
>> http://xxx.xxx.com/galaxy/u/amine/v/rna-seq-analysis-tophats-output";
>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_4) AppleWebKit/536.11 (KHTML,
>> like Gecko) Chrome/20.0.1132.47 Safari/536.11"
>> xxx.xxx.xx.xxx, xxx.xx.xx.x - - [12/Jul/2012:12:56:36 +0200] "GET
>> /galaxy/tracks/data?chrom=chr19&low=1182790&high=1183972&mode=Auto&resolution=2.954022988505747&dataset_id=ec90add676cb0cce&hda_ldda=hda&filter_cols=%5B%22Mapping+Quality%22%5D
>> HTTP/1.1" 200 - "
>> http://xxx.xxx.com/galaxy/u/amine/v/rna-seq-analysis-tophats-output";
>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_4) AppleWebKit/536.11 (KHTML,
>> like Gecko) Chrome/20.0.1132.47 Safari/536.11"
>> xxx.xxx.xx.xxx, xxx.xx.xx.x - - [12/Jul/2012:12:56:36 +0200] "GET
>> /galaxy/tracks/data?chrom=chr19&low=1181609&high=1182791&mode=Auto&resolution=2.954022988505747&dataset_id=ec90add676cb0cce&hda_ldda=hda&filter_cols=%5B%22Mapping+Quality%22%5D
>> HTTP/1.1" 200 - "
>> http://xxx.xxx.com/galaxy/u/amine/v/rna-seq-analysis-tophats-output";
>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_4) AppleWebKit/536.11 (KHTML,
>> like Gecko) Chrome/20.0.1132.47 Safari/536.11"
>> xxx.xxx.xx.xxx, xxx.xx.xx.x - - [12/Jul/2012:12:56:36 +0200] "GET
>> /galaxy/tracks/data?chrom=chr19&low=1183972&high=1185154&mode=Auto&resolution=2.954022988505747&dataset_id=ec90add676cb0cce&hda_ldda=hda&filter_cols=%5B%22Mapping+Quality%22%5D
>> HTTP/1.1" 200 - "
>> http://xxx.xxx.com/galaxy/u/amine/v/rna-seq-analysis-tophats-output";
>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_4) AppleWebKit/536.11 (KHTML,
>> like Gecko) Chrome/20.0.1132.47 Safari/536.11"
>> xxx.xxx.xx.xxx, xxx.xx.xx.x - - [12/Jul/2012:12:56:36 +0200] "GET
>> /galaxy/tracks/data?chrom=chr19&low=1180427&high=1181609&mode=Auto&resolution=2.954022988505747&dataset_id=cc26e7b927e75a3d&hda_ldda=hda&filter_cols=%5B%22Score%22%5D
>> HTTP/1.1" 200 - "
>> http://xxx.xxx.com/galaxy/u/amine/v/rna-seq-analysis-tophats-output";
>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_4) AppleWebKit/536.11 (KHTML,
>> like Gecko) Chrome/20.0.1132.47 Safari/536.11"
>> xxx.xxx.xx.xxx, xxx.xx.xx.x - - [12/Jul/2012:12:56:36 +0200] "GET
>> /galaxy/tracks/data?chrom=chr19&low=1181609&high=1182791&mode=Auto&resolution=2.954022988505747&dataset_id=cc26e7b927e75a3d&hda_ldda=hda&filter_cols=%5B%22Score%22%5D
>> HTTP/1.1" 200 - "
>> http://xxx.xxx.com/galaxy/u/amine/v/rna-seq-analysis-tophats-output";
>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_4)
>> AppleWebKit/536.11 (KHTML, like Gecko) Chrome/20.0.1132.47 Safari/536.11"
>> xxx.xxx.xx.xxx, xxx.xx.xx.x - - [12/Jul/2012:12:56:36 +0200] "GET
>> /galaxy/tracks/data?chrom=chr19&low=1182790&high=1183972&mode=Auto&resolution=2.954022988505747&dataset_id=cc26e7b927e75a3d&hda_ldda=hda&filter_cols=%5B%22Score%22%5D
>> HTTP/1.1" 200 - "
>> http://xxx.xxx.com/galaxy/u/amine/v/rna-seq-analysis-tophats-output";
>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_4) AppleWebKit/536.11 (KHTML,
>> like Gecko) Chrome/20.0.1132.47 Safari/536.11"
>> xxx.xxx.xx.xxx, xxx.xx.xx.x - - [12/Jul/2012:12:56:37 +0200] "GET
>> /galaxy/tracks/data?chrom=chr19&low=814128&high=815310&mode=Auto&resolution=2.954022988505747&dataset_id=7710e7c5028b7c3b&hda_ldda=hda&filter_cols=%5B%22Score%22%5D
>> HTTP/1.1" 200 - "
>> http://xxx.xxx.com/galaxy/u/amine/v/rna-seq-analysis-tophats-output";
>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_4) AppleWebKit/536.11 (KHTML,
>> like Gecko) Chrome/20.0.1132.47 Safari/536.11"
>>
>> PostgreSQL saw the crach :
>>
>> 2012-07-12 12:56:40 CEST LOG:  could not receive data from client:
>> Connection reset by peer
>> 2012-07-12 12:56:40 CEST LOG:  unexpected EOF on client connection
>> 2012-07-12 12:56:40 CEST LOG:  unexpected EOF on client connection
>> 2012-07-12 12:56:40 CEST LOG:  disconnection: session time: 0:00:46.907
>> user=user database=database host=server port=33106
>> 2012-07-12 12:56:40 CEST LOG:  unexpected EOF on client connection
>> 2012-07-12 12:56:40 CEST LOG:  unexpected EOF on client connection
>> 2012-07-12 12:56:40 CEST LOG:  unexpected EOF on client connection
>> 2012-07-12 12:56:40 CEST LOG:  disconnection: session time: 0:03:45.206
>> user=user database=database host=server port=42867
>> 2012-07-12 12:56:40 CEST LOG:  disconnection: session time: 0:06:43.257
>> user=user database=database host=server port=56383
>> 2012-07-12 12:56:40 CEST LOG:  disconnection: session time: 0:04:22.120
>> user=user database=database host=server port=42663
>> 2012-07-12 12:56:40 CEST LOG:  disconnection: session time: 0:04:22.596
>> user=user database=database host=server port=42656
>>
>>
>> Thanks
>> Amine
>> ___________________________________________________________
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