Hi All,

Maybe I missed it on the list here, but it seems that for samtools the pileup 
command has been deprecated without backward compatibility from the more recent 
samtools packages...

Did anyone rewrite some of the samtools tool wrappers for this....?
I am currently testing whether the Bam->pileup command can be easily changed in 
the sam_pileup.py script. But some functionality has gone and some additional 
is there. It seems I am up-to-date with the latest wrappers in the galaxy_dist 

Any pointers to recent wrappers would be welcomed.


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