My apologies if this seems obvious to many of you (seems like something
that will have been dealt with)- but I've been rooting around in the
docs and mailing list to no concrete avail.
I'm looking to Galaxyise our existing (somewhat informal) microarray
analysis workflows. I've found rexpression etc and the associated
helpful datatypes. But I'm stuck at the import of .CEL files:
* Do I need to create a new datatype to represent .CEL? The fact this
doesn't exist by default suggests it's not the right approach.
* Assuming I was to do the above, how would I create a function to
generate an affyBatch (for example) from an unspecified number of
* Is the solution to have R work with a .tar and a config file to
produce the affyBatch, thereby bypassing the .CEL requirement? But
then there's no .tar datatype either.....
If I've missed the docs I'm happy to be chided and pushed in the right
Dr Jonathan Manning
Centre for Cardiovascular Science
University of Edinburgh
Queens Medical Research Institute
47 Little France Crescent
Edinburgh EH16 4TJ
T: +44 131 242 6700
F: +44 131 242 6782
The University of Edinburgh is a charitable body, registered in
Scotland, with registration number SC005336.
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