On Aug 2, 2012, at 9:32 PM, Nikhil Joshi wrote:
> Hi all,
> We just upgraded our local galaxy to the latest version and now I am
> trying to get automatic tool installation to work properly. I changed
> the universe_wsgi.ini file to enable the toolshed xml file,
Regarding this, do you mean that you have something like the following setting?
tool_config_files = tool_conf.xml,shed_tool_conf.xml
> I created
> a "shed_tools" directory one above the galaxy install, and restarted
> galaxy. But when I try to install a repository, I get this error as a
> popup: "Initializing repository installation failed".
>From what tool shed are you trying to install Galaxy? When this pop-up is
>displayed, the last line of your Galaxy paster log should be a url. If you
>paste that url into a browser it will display a page that displays the entire
>stack trace for the exception. We'll need to see this information in order to
>determine the cause of the problem.
> I tried this
> with various repositories, but I get the same error. Then when I go
> to "Manage installed tool shed repositories", all of the repositories
> I tried to install are stuck in the "Cloning" state. Finally, if I
> try to uninstall any of them, I get this error, with a traceback:
> AttributeError: 'NoneType' object has no attribute 'startswith'
> Any ideas?
> - Nik.
> Nikhil Joshi
> Bioinformatics Analyst/Programmer
> UC Davis Bioinformatics Core
> najoshi -at- ucdavis -dot- edu
> 530.752.2698 (w)
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