Excuses for the repost, but I really need to solve this.
Uploading with FTP fails on our Galaxy, because the /tmp directory has
not enough space. How can I hack in the Galaxy code base that the
temporary directory needs to be /mnt/galaxydb/tmp ? Another solution:
how can I provide a symlink to our FTP directory?
Thanks for any hint,
Joachim Jacob, PhD
Rijvisschestraat 120, 9052 Zwijnaarde
Tel: +32 9 244.66.34
Bioinformatics Training and Services (BITS)
On 08/08/2012 12:12 PM, Joachim Jacob wrote:
Question about FTP upload: is it correct that Galaxy copies the data
from the FTP upload directory to galaxy database instead of
symlinking? Can I set somewhere the option to symlink instead of copying?
I run galaxy in a small virtual machine. The Galaxy database is on a
network share. With 'get data' - 'Upload file', when importing the
files I have uploaded with FTP, there is a process filling up the /tmp
directory with the file I want to import.
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