I have a set of galaxyised R scripts, called directly via 'Rscript',
which I run in workflows for microarray analysis.
I would like to collect the parameters used at each step, for report
generation, re-runs and provenance. My Galaxy noob instincts tell me to
have each script 'output its inputs' to a file, several of which I would
collate at the end of the workflow.
Is there, as I suspect, a better way of doing this? I'm sure Galaxy has
the info somewhere, I'm just not sure how to get at and use it. Is
there a global variable I can pass from the tool xml that can be used to
access this info?
All pointers appreciated.
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