Hans,

I set the actual IP address and it works.

Thanks,
Iry

On 8/24/12 8:07 AM, "Hans-Rudolf Hotz" <h...@fmi.ch> wrote:

>Hi Iry
>
>  - try different port
>  - try the actual IP address of your host
>
>
>Regards, Hans
>
>
>On 08/24/2012 01:52 PM, Iry Witham wrote:
>> Hi Team,
>>
>> I am attempting to get the reports interface for my galaxy server to
>> function.  I have my reports.wsgi.ini configured so:
>>
>> # ---- HTTP Server
>> ----------------------------------------------------------
>>
>> [server:main]
>>
>> use = egg:Paste#http
>> port = 9001
>> host = 127.0.0.1
>> use_threadpool = true
>> threadpool_workers = 10
>>
>> # ---- Galaxy Webapps Report Interface
>> -------------------------------------------------
>>
>> [app:main]
>>
>> # Specifies the factory for the universe WSGI application
>> paste.app_factory = galaxy.webapps.reports.buildapp:app_factory
>> log_level = DEBUG
>>
>> # Database connection
>> # Galaxy reports are intended for production Galaxy instances, so sqlite
>> is not supported.
>> # You may use a SQLAlchemy connection string to specify an external
>> database.
>> database_connection = postgres:///galaxy_1
>>
>> # Where dataset files are saved
>> file_path = database/files
>> # Temporary storage for additional datasets, this should be shared
>> through the cluster
>> new_file_path = database/tmp
>>
>> # Session support (beaker)
>> use_beaker_session = True
>> session_type = memory
>> session_data_dir = %(here)s/database/beaker_sessions
>> session_key = galaxysessions
>> session_secret = changethisinproduction
>>
>> # Configuration for debugging middleware
>> # debug = true
>> use_lint = false
>>
>> # NEVER enable this on a public site (even test or QA)
>> # use_interactive = true
>>
>> # path to sendmail
>> # sendmail_path = /usr/sbin/sendmail
>>
>> # Address to join mailing list
>> # mailing_join_addr = galaxy-user-j...@bx.psu.edu
>> <mailto:galaxy-user-j...@bx.psu.edu>
>>
>> # Write thread status periodically to 'heartbeat.log' (careful, uses
>> disk space rapidly!)
>> ## use_heartbeat = True
>>
>> # Profiling middleware (cProfile based)
>> ## use_profile = True
>>
>> # Mail
>> smtp_server = smtp.jax.org
>> error_email_to = cbr-h...@jax.org <mailto:cbr-h...@jax.org>
>>
>> # Use the new iframe / javascript based layout
>> use_new_layout = true
>>
>> # Serving static files (needed if running standalone)
>> static_enabled = True
>> static_cache_time = 360
>> static_dir = %(here)s/static/
>> static_images_dir = %(here)s/static/images
>> static_favicon_dir = %(here)s/static/favicon.ico
>> static_scripts_dir = %(here)s/static/scripts/
>> static_style_dir = %(here)s/static/june_2007_style/blue
>>
>> The reports_webapp.log shows no errors but the process never completes
>> loading.  I stop the process manually after 20 minutes or more and no
>> reports interface:
>>
>> python path is:
>> 
>>/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/pycrypto-2.5-py2.6-lin
>>ux-x86_64-ucs4.egg,
>> 
>>/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/python_lzo-1.08_2.03_s
>>tatic-py2.6-linux-x86_64-ucs4.egg,
>> 
>>/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/bx_python-0.7.1_7b95ff
>>194725-py2.6-linux-x86_64-ucs4.egg,
>> 
>>/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/amqplib-0.6.1-py2.6.eg
>>g,
>> 
>>/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/pexpect-2.4-py2.6.egg,
>> 
>>/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r
>>6498-py2.6.egg,
>> 
>>/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/Babel-0.9.4-py2.6.egg,
>> 
>>/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/MarkupSafe-0.12-py2.6-
>>linux-x86_64-ucs4.egg,
>> /hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg,
>> 
>>/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/WebHelpers-0.2-py2.6.e
>>gg,
>> 
>>/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/simplejson-2.1.1-py2.6
>>-linux-x86_64-ucs4.egg,
>> 
>>/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/wchartype-0.1-py2.6.eg
>>g,
>> 
>>/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/elementtree-1.2.6_2005
>>0316-py2.6.egg,
>> 
>>/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/docutils-0.7-py2.6.egg
>>,
>> 
>>/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/WebOb-0.8.5-py2.6.egg,
>> 
>>/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/Routes-1.12.3-py2.6.eg
>>g,
>> 
>>/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/Cheetah-2.2.2-py2.6-li
>>nux-x86_64-ucs4.egg,
>> 
>>/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.
>>6.egg,
>> 
>>/hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/PasteScript-1.7.3-py2.
>>6.egg,
>> /hpcdata/galaxy-test/galaxy-setup/galaxy-dist/eggs/Paste-1.6-py2.6.egg,
>> /hpcdata/galaxy-test/galaxy-setup/galaxy-dist/lib,
>> /usr/lib/python26.zip, /usr/lib64/python2.6,
>> /usr/lib64/python2.6/plat-linux2, /usr/lib64/python2.6/lib-tk,
>> /usr/lib64/python2.6/lib-old, /usr/lib64/python2.6/lib-dynload,
>> /usr/lib64/python2.6/site-packages,
>> /usr/lib64/python2.6/site-packages/Numeric,
>> /usr/lib64/python2.6/site-packages/gtk-2.0,
>> /usr/local/lib64/python2.6/site-packages
>> galaxy.model.custom_types DEBUG 2012-08-20 13:03:04,572 psycopg2 egg
>> successfully loaded for postgres dialect
>> galaxy.web.framework.base DEBUG 2012-08-20 13:03:09,297 Enabling 'users'
>> controller, class: Users
>> galaxy.web.framework.base DEBUG 2012-08-20 13:03:09,310 Enabling
>> 'system' controller, class: System
>> galaxy.web.framework.base DEBUG 2012-08-20 13:03:09,354 Enabling
>> 'sample_tracking' controller, class: SampleTracking
>> galaxy.web.framework.base DEBUG 2012-08-20 13:03:09,379 Enabling 'jobs'
>> controller, class: Jobs
>> galaxy.web.framework.base DEBUG 2012-08-20 13:03:09,418 Enabling
>> 'workflows' controller, class: Workflows
>> galaxy.web.framework.base DEBUG 2012-08-20 13:03:09,430 Enabling 'root'
>> controller, class: Report
>> galaxy.webapps.reports.buildapp DEBUG 2012-08-20 13:03:09,433 Enabling
>> 'httpexceptions' middleware
>> galaxy.webapps.reports.buildapp DEBUG 2012-08-20 13:03:09,443 Enabling
>> 'recursive' middleware
>> galaxy.webapps.reports.buildapp DEBUG 2012-08-20 13:03:09,590 Enabling
>> 'error' middleware
>> galaxy.webapps.reports.buildapp DEBUG 2012-08-20 13:03:09,601 Enabling
>> 'trans logger' middleware
>> galaxy.webapps.reports.buildapp DEBUG 2012-08-20 13:03:09,601 Enabling
>> 'config' middleware
>> galaxy.webapps.reports.buildapp DEBUG 2012-08-20 13:03:09,614 Enabling
>> 'x-forwarded-host' middleware
>> Starting server in PID 15823.
>> serving on http://127.0.0.1:9001
>> Removing PID file reports_webapp.pid
>>
>> I am not sure what is going on, but I need to get this working again.
>>   Any help would be greatly appreciated.
>>
>> Thanks,
>> Iry
>>
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>>
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