Dear Hans,

Thank you for your help. Unfortunately after deleting the file and restarting 
one of them still remains. Is there anything more I could do?

Regards,
Efthymios Ladoukakis

> Date: Thu, 6 Sep 2012 14:25:11 +0200
> From: h...@fmi.ch
> To: makis4e...@hotmail.com
> CC: galaxy-u...@lists.bx.psu.edu; galaxy-...@bx.psu.edu
> Subject: Re: Tools won't go away even after deleting it from tool_conf.xml
> 
> 
> moving to galaxy-dev....
> 
> 
> this is probably related to this issue:
> 
> http://dev.list.galaxyproject.org/problems-with-labels-in-the-tool-box-and-order-of-the-tools-td4655985.html
> 
> Hence, try deleting "integrated_tool_panel.xml" first before you do a 
> restart.
> 
> Regards, Hans
> 
> On 09/06/2012 01:29 PM, Makis Ladoukakis wrote:
> > Dear Galaxy users,
> >
> > Has anyone experienced this problem before? In my local instance of
> > Galaxy on a server I've deleted the path of almost all sections with
> > their corresponding tools from tool_conf.xml (wanting to leave my own
> > customized section) but after a restart and a new run of the run.sh
> > there are still two of them (SNP/WGA: Data; Filters andPhenotype
> > Association) left in the tool list with their first tool also appearing.
> > Is there a special setting for those two? Can anyone help me?
> >
> > Thank you,
> > Efthymios Ladoukakis
> >
> >
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