I am comparing two samples (control and treated) paired end RNA Seq data.
In the cuffdiff output I have noticed that few genes have zero FPKM value
in one sample and other sample has significant FPKM value.
I want to identify uniquely expressed genes identified only in one sample
(either control or treated).
My question: If something is measured with significance in one sample (high
FPKM), but not measured at all in another sample (Zero FPKM), should I
consider that gene as significant?
Can anyone explain this.
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at: