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On Tue, Sep 11, 2012 at 3:37 PM,  <kauerb...@comcast.net> wrote:
> Hi Peter,
>
>
>
> This is what I get:
>
>
>
> [auerbach@babar ~]$ ls
> /9720/genome_references/ncbi/nr-protein-db/nr-newstyle/nr*
>
> /9720/genome_references/ncbi/nr-protein-db/nr-newstyle/nr
>
> /9720/genome_references/ncbi/nr-protein-db/nr-newstyle/nr.gz

Normally you would download and decompress all of the NR
database from the NCBI FTP site. It is currently in seven parts
(seven tar balls), available here: ftp://ftp.ncbi.nlm.nih.gov/blast/db/

Where did your nr.gz file come from? That isn't normal... but
perhaps it was copied from another server - what is inside it?

Peter
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