David, because of the restrictive licensing terms of GATK2 the main
Galaxy Team will not continue to develop any GATK tools except for
those which remain under the open source license (basically, GATK

We will be very happy to have wrappers for these and other
non-open-source tools contributed to the toolshed however for those
who wish to use them.

-- jt

On Tue, Sep 11, 2012 at 10:41 AM, David Hoover <hoove...@helix.nih.gov> wrote:
> Is anyone working on adapting the GATK tools for a more recent version of 
> GATK?  The distributed version is 1.4, and GATK is up to 2.1.
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