Are there any environment variables that are honored by toolshed installed
tools? I tried creating a tool that uses ${GALAXY_DATA_INDEX_DIR} or
$GALAXY_HOME, then uploaded it the test toolshed, then installed it
automatically. Neither of these resolved to what I expected. I don't want to
hard-code the path in the xml tool file, but rather have a default location for
other executables and jar files. How should this best be done?
David Hoover
Helix Systems Staff
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