Are there any environment variables that are honored by toolshed installed 
tools?  I tried creating a tool that uses ${GALAXY_DATA_INDEX_DIR} or 
$GALAXY_HOME, then uploaded it the test toolshed, then installed it 
automatically.  Neither of these resolved to what I expected.  I don't want to 
hard-code the path in the xml tool file, but rather have a default location for 
other executables and jar files.  How should this best be done?

David Hoover
Helix Systems Staff
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