Thanks for reporting this error, it has been fixed in revision
7663:cc064ff4249b. Please let us know if you encounter additional issues.
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On Sep 10, 2012, at 12:23 PM, Felix Homa wrote:
> We noticed a problem with the tool Filter Fastq. It seemed to mishandle the
> paired-end checkbox. Here is the XML which seems to not work:
> <param name="paired_end" label="This is paired end data" type="boolean"
> truevalue="paired_end" falsevalue="single_end" checked="False"/>
> Concretely, $paired_end.value return True or False as value and not
> "paired_end" or "single_end", so in the python code execution,
> #if $paired_end.value == 'single_end':
> qual_scores_split = [ qual_scores ]
> qual_scores_split = [ qual_scores[ 0:int( len( qual_scores ) / 2 ) ],
> qual_scores[ int( len( qual_scores ) / 2 ): ]]
> Always go in the else, always splitting reads even when they are single_end.
> It induces wrong results in our read filtering.
> I hope the explanation is clear enough
> Best regards,
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Please keep all replies on the list by using "reply all"
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