Hi All,

I'm wondering why the Bowtie version in (even latest) Galaxy does NOT support 
.csfasta/.qual input files directly, though it is mentioned under "Map with 
Bowtie for SOLiD". This is the case of "BWA for SOLiD" as well. One would 
expect direct support on colorspace files. Do you have any plans of 
implementing this?I see this would be a great support to SOLiD users.

Look forward to your comments

Thanks,
Raj





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