The Cufflinks wrapper doesn't support v2.0 or greater yet. Please use v1.3.0
We expect to update the Cufflinks wrapper to support v2.0+ in the next couple
On Sep 25, 2012, at 5:34 PM, wormbuff wrote:
> I recently installed Galaxy on Ubuntu 12.04.1 LTS. Bowtie, SAMtools, and
> Tophat all run fine with my small subset of paired-end Illumina reads.
> Unfortunately, it seems to only partially work when I run Cufflinks v2.0.2.
> Three entires in my history appear (gene expression, transcript expression,
> and assembled transcripts) containing reasonable output. Each of these
> entries is highlighted red, though without the red circle with an X. The box
> contains the message:
> An error occurred running this job:
> cufflinks v2.0.2
> cufflinks -q --no-update-check -l 300000 -F 0.100000 -j 0.150000 -p 4
> cp: cannot stat `
> No such file or directory
> What is this global_model.txt file and why might it be missing/have failed?
> (sorry about the repost... original got embedded in an unrelated thread)
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Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at: