On Fri, Sep 28, 2012 at 11:28 PM, Robert Chase <re...@channing.harvard.edu> wrote: > Hello, > > We added batch gfPcr as a tool in galaxy by writing a wrapper. We wrote > another tool in python to modify the output of this tool (we increment the > starts of the intervals by 1 to make the starting intervals 1 based) and > wrote a wrapper for this other tool. Is is possible to couple these tools > together as a single tool by writing a xml file? > > -Rob
Yes - you might be able to do it just as the one xml file with some command line piping to link the two tools, or perhaps pass two commands to the shell. Alternatively having the new combined XML use a simple wrapper script calling the two existing tools might be easier. Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
