No, that's not it. The galaxy user, as well as all other users, have umask 022 by default.
I believe the problem is with Apache uploading. I can't figure out how to reconfigure Apache to set the permissions they way I want them. David On Oct 2, 2012, at 1:17 PM, Oleksandr Moskalenko wrote: > Hi David, > > I wonder if the user's umask is the problem. > > I set the galaxy user's umask to 022 and our default umask on the cluster is > 0022 for all users. > > On Oct 2, 2012, at 12:55 PM, David Hoover <hoove...@helix.nih.gov> wrote: > >> I'm playing with the "submitting jobs as the real user" method, and >> immediately ran into a problem. Uploaded files are created in mode 600, >> owned by the user. Galaxy then gives an error that the tmp file is not >> readable: >> >> IOError: [Errno 13] Permission denied: >> '/spin1/users/galaxy/galaxy2/database/tmp/tmp3KHIDt' >> >> Is there any way of changing the permissions on the temporary uploaded file >> to 666? >> >> David Hoover >> Helix Systems Staff >> ___________________________________________________________ >> Please keep all replies on the list by using "reply all" >> in your mail client. To manage your subscriptions to this >> and other Galaxy lists, please use the interface at: >> >> http://lists.bx.psu.edu/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
