I've just been setting up our internal galaxy server and following the instructions to get the NCBI BLAST+ tool working but I kept getting stuck with it passing -db "" in rather than the actual database name. It turns out, because I had copied the examples in the blastdb_p.loc file, I had put two tabs in just as in the sample doc. This doesn't work. It has to be one tab. However, I would say that it would be better for the code to be fixed so it can handle a variable number of tabs rather than being so strict.
Shane ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/