On Thu, Oct 4, 2012 at 8:56 PM, Shane Sturrock <sh...@biomatters.com> wrote:
> I've just been setting up our internal galaxy server and following
> the instructions to get the NCBI BLAST+ tool working but I kept
> getting stuck with it passing -db "" in rather than the actual
> database name.  It turns out, because I had copied the
> examples in the blastdb_p.loc file, I had put two tabs in just
> as in the sample doc.  This doesn't work.  It has to be one tab.

You're seeing a double tab in the blastdb_p.loc.sample file?
Which line? I should fix that.

> However, I would say that it would be better for the code
> to be fixed so it can handle a variable number of tabs rather
> than being so strict.

But that would break valid situations where you might want
an empty field in a table. OK, not likely with the BLAST
databases, but it could apply to other *.loc files in Galaxy.


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