On one particular history, I see this.
I am at
035583d94b11<https://bitbucket.org/galaxy/galaxy-central/changeset/035583d94b11200276aed333a859b8e49b64429f>
I don't know why this happens on this history…
I cloned it, then re-ran one step.
I hope this stacktrace is helpful:
Exception happened during processing of request from ('127.0.0.1', 56949)
Traceback (most recent call last):
File
"/mnt/ngswork/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpserver.py",
line 1053, in process_request_in_thread
self.finish_request(request, client_address)
File "/usr/lib/python2.6/SocketServer.py", line 320, in finish_request
self.RequestHandlerClass(request, client_address, self)
File "/usr/lib/python2.6/SocketServer.py", line 615, in __init__
self.handle()
File
"/mnt/ngswork/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpserver.py",
line 432, in handle
BaseHTTPRequestHandler.handle(self)
File "/usr/lib/python2.6/BaseHTTPServer.py", line 329, in handle
self.handle_one_request()
File
"/mnt/ngswork/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpserver.py",
line 427, in handle_one_request
self.wsgi_execute()
File
"/mnt/ngswork/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpserver.py",
line 287, in wsgi_execute
self.wsgi_start_response)
File
"/mnt/ngswork/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/urlmap.py",
line 202, in __call__
return app(environ, start_response)
File
"/mnt/ngswork/galaxy/galaxy-dist/lib/galaxy/web/framework/middleware/xforwardedhost.py",
line 21, in __call__
return self.app( environ, start_response )
File
"/mnt/ngswork/galaxy/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/config.py",
line 164, in __call__
app_iter = self.application(environ, start_response)
File
"/mnt/ngswork/galaxy/galaxy-dist/lib/galaxy/web/framework/middleware/translogger.py",
line 68, in __call__
return self.application(environ, replacement_start_response)
File
"/mnt/ngswork/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/exceptions/errormiddleware.py",
line 153, in __call__
exc_info)
File
"/mnt/ngswork/galaxy/galaxy-dist/lib/galaxy/web/framework/middleware/translogger.py",
line 67, in replacement_start_response
return start_response( status, headers, exc_info )
File
"/mnt/ngswork/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/exceptions/errormiddleware.py",
line 143, in __call__
app_iter = self.application(environ, start_response)
File
"/mnt/ngswork/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/recursive.py",
line 80, in __call__
return self.application(environ, start_response)
File
"/mnt/ngswork/galaxy/galaxy-dist/lib/galaxy/web/framework/middleware/remoteuser.py",
line 91, in __call__
return self.app( environ, start_response )
File
"/mnt/ngswork/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpexceptions.py",
line 632, in __call__
return self.application(environ, start_response)
File "/mnt/ngswork/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py", line
169, in __call__
return body( environ, start_response )
File "/mnt/ngswork/galaxy/galaxy-dist/lib/galaxy/web/framework/__init__.py",
line 858, in render
template.render_context( context )
File
"/mnt/ngswork/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg/mako/template.py",
line 319, in render_context
**kwargs)
File
"/mnt/ngswork/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg/mako/runtime.py",
line 692, in _render_context
_exec_template(inherit, lclcontext, args=args, kwargs=kwargs)
File
"/mnt/ngswork/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg/mako/runtime.py",
line 718, in _exec_template
callable_(context, *args, **kwargs)
File
"/mnt/ngswork/galaxy/galaxy-dist/database/compiled_templates/root/history.mako.py",
line 306, in render_body
__M_writer(unicode(render_dataset( data, data.hid, show_deleted_on_refresh
= show_deleted, for_editing = True )))
File
"/mnt/ngswork/galaxy/galaxy-dist/database/compiled_templates/root/history_common.mako.py",
line 553, in render_render_dataset
visualizations = data.get_visualizations()
File "/mnt/ngswork/galaxy/galaxy-dist/lib/galaxy/model/__init__.py", line
1251, in get_visualizations
return self.datatype.get_visualizations( self )
File "/mnt/ngswork/galaxy/galaxy-dist/lib/galaxy/datatypes/tabular.py", line
312, in get_visualizations
for col_type in dataset.metadata.column_types:
TypeError: 'NoneType' object is not iterable
brad
--
Brad Langhorst
[email protected]<mailto:[email protected]>
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/
