The installation is mine. It's using MySQL for the db. I have two other installations. This is the only one that holds the galaxy database directory on an nfs mount. The other two installations don't exhibit this problem. All 3 installations run on centos 5.8 using python 2.6.

Sent from my iPad

On Oct 5, 2012, at 3:24, Peter Cock <p.j.a.c...@googlemail.com <mailto:p.j.a.c...@googlemail.com>> wrote:


On Wednesday, October 3, 2012, Pete Schmitt wrote:


    When attempting the change the filetype of a fastq file to
    fastqsanger, the process for changing the type goes on forever.  This
    does not allow any further processing of the data.


That's strange - this should be really fast as it doesn't change the file on disk, just the metadata in Galaxy's database.

(The FASTQ groomer is much slower because it does write a new file)

Which Galaxy installation was this on? If yours, do you know anything about the setup (e.g. database used)?

Peter
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