*Galaxy October 5, 2012 Distribution & News Brief*
/http://wiki.g2.bx.psu.edu/DevNewsBriefs/2012_10_05/

/*
Highlights:*
http://wiki.g2.bx.psu.edu/News

/

**

 *

   *BWA <http://bio-bwa.sourceforge.net/>* tool wrappers /migrated
   
<http://wiki.g2.bx.psu.edu/DevNewsBriefs/2012_10_05#BWA_Migration_to_Tool_Shed>/
   to the *Galaxy Main Tool Shed <http://toolshed.g2.bx.psu.edu/>*.

 *

   *Tool Factory* paper has been /E Published
   
<http://wiki.g2.bx.psu.edu/DevNewsBriefs/2012_10_05#Galaxy_Tool_Factory_Paper_E_Published>/
   in PubMed <http://www.ncbi.nlm.nih.gov/pubmed> at *PMID: 23024011
   <http://www.ncbi.nlm.nih.gov/pubmed/23024011>*.

 *

   The *Tool Shed Wiki <http://wiki.g2.bx.psu.edu/Tool%20Shed>* wiki
   has been re-written with a new, cleaner presentation. And check out
   all the /new features
   <http://wiki.g2.bx.psu.edu/DevNewsBriefs/2012_10_05#Tool_Shed>/!

 *

   Accessible *tool versions* in the UI and *new exit code features*
   enable /clearer experimental tracking and ease reproducibility
   <http://wiki.g2.bx.psu.edu/DevNewsBriefs/2012_10_05#Tools>/.

 *

   Release also includes *Visualization
   <http://wiki.g2.bx.psu.edu/DevNewsBriefs/2012_10_05#Visualization_framework>*
   updates, a new admin tool for /PostgreSQL
   <http://www.postgresql.org>/ *Dataset cleanup
   <http://wiki.g2.bx.psu.edu/DevNewsBriefs/2012_10_05#Dataset_Cleanup>*,
   and improvements in *API
   <http://wiki.g2.bx.psu.edu/DevNewsBriefs/2012_10_05#AP>* , *Workflow
   <http://wiki.g2.bx.psu.edu/DevNewsBriefs/2012_10_05#Workflows>*, and
   *Security
   <http://wiki.g2.bx.psu.edu/DevNewsBriefs/2012_10_05#Security_Fixes>*
   components.

http://getgalaxy.org
http://bitbucket.org/galaxy/galaxy-dist

*
new: *         $ hg clone http://www.bx.psu.edu/hg/galaxy galaxy-dist
*
upgrade:*   $ hg pull -u -r b5bda7a5c345

**

*
Thanks for using Galaxy!*

Jennifer Jackson & Galaxy Team

http://galaxyproject.org

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