Dear All,
Could you please tell where or how I could get the list of
multi-threaded tools and the amount of threads they open by default?
Thanks a lot
Jean-François
PS: I have collected the following list by hands:
#Tool_id Num_thread
gatk_count_covariates 4
gatk_realigner_target_creator 4
gatk_unified_genotyper 4
gatk_variant_eval 4
gatk_variant_recalibrator 4
gatk_variant_select 4
bfast_wrapper 4
bowtie2 4
bowtie_color_wrapper 4
bowtie_wrapper 4
bwa_color_wrapper 4
bwa_wrapper 4
cuffdiff 4
cufflinks 4
cuffmerge 4
tophat2 4
tophat_color 4
tophat 4
--
#####################################
Dr Jean-François Taly
Bioinformatician
Bioinformatics Core Facility
http://biocore.crg.cat
CRG - Centre de Regulació Genòmica (Room 439)
Parc de Recerca Biomèdica de Barcelona (PRBB)
Doctor Aiguader, 88
08003 Barcelona
Spain
email: jean-francois.t...@crg.eu
phone: +34 93 316 0202
fax: +34 93 316 0099
#####################################
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/
