You can get to the captured stdout/stderr in the UI by clicking the
info (i) button for the dataset. The way I would normally debug
outside of the Galaxy UI is to take the command line generated by
Galaxy (which should be logged) and run it outside Galaxy.

-- jt

On Fri, Oct 12, 2012 at 9:35 AM, Mark Johnson <> wrote:
> My problem is I can't get print debugging to work. Galaxy captures both
> stdout and stderr and stashes them in a db somewhere.
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