Hello,
> socket.error: [Errno 98] Address already! in use
This error message indicates that Galaxy is trying to bind to a port
that is in use by another application. Changing the port option in your
universe_wsgi.ini to a different value should resolve this issue.
--Dave B.
On 10/17/12 08:26:39.000, 王聃 wrote:
Hello, galaxy developers and maintainers:
I'm a user from the Chinese mainland.
I have ubuntu 12.04 OS and python2.7.3 interpreter. After confirming
that I've installed openssl-dev and bzip-dev and python version >2.5, I
use virtualenv to create galaxy_env and just run "hg clone
https:xxxxxxxx/galaxy-dist; cd galaxy-dist; sh run.sh" in the directory
of galaxy. It seems that it's not the problem of linux w/r/x permission.
After downloading some egg of python, the shell display as follows:
############################################################################################
/home/don/galaxy-dist/lib/galaxy/__init__.py:79: UserWarning: Module
markupsafe was already imported from
/usr/lib/python2.7/dist-packages/markupsafe/__init__.pyc, but
/home/don/galaxy-dist/eggs/MarkupSafe-0.12-py2.7-linux-x86_64-ucs4.egg
is being added to sys.path
self.check_version_conflict()
..................
..................
Starting server in PID 12288.
Traceback (most recent call last):
File "./scripts/paster.py", line 34, in <module>
command.run()
File
"/home/don/galaxy-dist/eggs/PasteScript-1.7.3-py2.7.egg/paste/script/command.py",
line 84, in run
invoke(command, command_name, options, args[1:])
File
"/home/don/galaxy-dist/eggs/PasteScript-1.7.3-py2.7.egg/paste/script/command.py",
line 123, in invoke
exit_code = runner.run(args)
File
"/home/don/galaxy-dist/eggs/PasteScript-1.7.3-py2.7.egg/paste/script/command.py",
line 218, in run
result = self.command()
File
"/home/don/galaxy-dist/eggs/PasteScript-1.7.3-py2.7.egg/paste/script/serve.py",
line 303, in command
serve()
File
"/home/don/galaxy-dist/eggs/PasteScript-1.7.3-py2.7.egg/paste/script/serve.py",
line 287, in serve
server(app)
File
"/home/don/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.7.egg/paste/deploy/loadwsgi.py",
line 151, in server_wrapper
**context.local_conf)
File
"/home/don/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.7.egg/paste/deploy/util/fixtypeerror.py",
line 57, in fix_call
val = callable(*args, **kw)
File
"/home/don/galaxy-dist/eggs/Paste-1.6-py2.7.egg/paste/httpserver.py",
line 1314, in server_runner
serve(wsgi_app, **kwargs)
File
"/home/don/galaxy-dist/eggs/Paste-1.6-py2.7.egg/paste/httpserver.py",
line 1264, in serve
threadpool_options=threadpool_options)
File
"/home/don/galaxy-dist/eggs/Paste-1.6-py2.7.egg/paste/httpserver.py",
line ! 1114, in __init__
RequestHandlerClass, ssl_cont! ext)
File
"/home/don/galaxy-dist/eggs/Paste-1.6-py2.7.egg/paste/httpserver.py",
line 1094, in __init__
RequestHandlerClass, ssl_context)
File
"/home/don/galaxy-dist/eggs/Paste-1.6-py2.7.egg/paste/httpserver.py",
line 358, in __init__
HTTPServer.__init__(self, server_address, RequestHandlerClass)
File "/usr/lib/python2.7/SocketServer.py", line 408, in __init__
self.server_bind()
File "/usr/lib/python2.7/BaseHTTPServer.py", line 108, in server_bind
SocketServer.TCPServer.server_bind(self)
File "/usr/lib/python2.7/SocketServer.py", line 419, in server_bind
self.socket.bind(self.server_address)
File "/usr/lib/python2.7/socket.py", line 224, in meth
return getattr(self._sock,name)(*args)
socket.error: [Errno 98] Address already! in use
############################################################################################
And I really have no idea what's wrong with galaxy and python.
Thanks for your help and advice.
Wangdan
2012.10.17
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___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/
