Hello,
Is it possible to load a unique gff file with the annotations of several
chromosomes for my custom build in one step (one gff file)?
With the current version of galaxy, it seems that I can load a gff file
referring only to one chromosome. That's pretty tedious to load 43 gff
files separatly for my custom build...
If I try, I get this error:
Traceback (most recent call last):
File
"~/galaxy-dist/lib/galaxy/datatypes/converters/interval_to_fli.py", line
91, in
main()
File
"~/galaxy-dist/lib/galaxy/datatypes/converters/interval_to_fli.py", line
30, in main
for feature in read_unordered_gtf( open( in_fname, 'r' ) ):
File "~/galaxy-dist/lib/galaxy/datatypes/util/gff_util.py", line 389,
in read_unordered_gtf
feature = GFFFeature( None, intervals=intervals )
File "~/galaxy-dist/lib/galaxy/datatypes/util/gff_util.py", line 65,
in __init__
( interval.chrom, self.chrom ) )
ValueError: interval chrom does not match self chrom: SAGS2 != SAGS1
Thanks
Yec'han
================================================
Yec'han LAIZET
Ingenieur
Plateforme Genome Transcriptome
Tel: 05 57 12 27 75
_________________________________
INRA-UMR BIOGECO 1202
Equipe Genetique
69 route d'Arcachon
33612 CESTAS
================================================
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/
